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1.
Nothias, L.F.* et al.: Feature-based molecular networking in the GNPS analysis environment. Nat. Methods 17, 905–908 (2020)
2.
Todorov, M.I. et al.: Machine learning analysis of whole mouse brain vasculature. Nat. Methods, accepted (2020)
3.
Büttner, M. ; Miao, Z.* ; Wolf, F.A. ; Teichmann, S.A.* & Theis, F.J.: A test metric for assessing single-cell RNA-seq batch correction. Nat. Methods 16, 43-49 (2019)
4.
Lotfollahi, M. ; Wolf, F.A. & Theis, F.J.: scGen predicts single-cell perturbation responses. Nat. Methods 16, 715-721 (2019)
5.
Qian, Y.* et al.: A genetically encoded near-infrared fluorescent calcium ion indicator. Nat. Methods 16, 171-174 (2019)
6.
Weigert, M.* et al.: Content-aware image restoration: Pushing the limits of fluorescence microscopy. Nat. Methods 15, 1090-1097 (2018)
7.
Azencott, C.* et al.: The inconvenience of data of convenience: Computational research beyond post-mortem analyses. Nat. Methods 14, 937-938 (2017)
8.
Buggenthin, F. et al.: Prospective identification of hematopoietic lineage choice by deep learning. Nat. Methods, DOI: 10.1038/nmeth.4182 (2017)
9.
Nasr, M.L.* et al.: Covalently circularized nanodiscs for studying membrane proteins and viral entry. Nat. Methods 14, 49-52 (2017)
10.
Symvoulidis, P. et al.: NeuBtracker-imaging neurobehavioral dynamics in freely behaving fish. Nat. Methods 14, 1079-1082 (2017)
11.
Van Deun, J.* et al.: EV-TRACK: Transparent reporting and centralizing knowledge in extracellular vesicle research. Nat. Methods 14, 228-232 (2017)
12.
Haghverdi, L. ; Büttner, M. ; Wolf, F.A. ; Buettner, F. & Theis, F.J.: Diffusion pseudotime robustly reconstructs lineage branching. Nat. Methods 13, 845-848 (2016)
13.
Lundby, A.* et al.: Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. Nat. Methods 11, 868-874 (2014)
14.
Hahne, H.* et al.: DMSO enhances electrospray response, boosting sensitivity of proteomic experiments. Nat. Methods 10, 989-991 (2013)
15.
Ale, A.B.F et al.: FMT-XCT: In vivo animal studies with hybrid fluorescence molecular tomography-X-ray computed tomography. Nat. Methods 9, 615-620 (2012)
16.
Orchard, S.* et al.: Protein interaction data curation: The International Molecular Exchange (IMEx) consortium. Nat. Methods 9, 345-350 (2012)
17.
Tschöp, M.H. et al.: A guide to analysis of mouse energy metabolism. Nat. Methods 9, 57-63 (2012)
18.
Schnütgen, F.* et al.: Resources for proteomics in mouse embryonic stem cells. Nat. Methods 8, 103-104 (2011)
19.
Schroeder, T.: Long-term single-cell imaging of mammalian stem cells. Nat. Methods 8, Suppl. S, S30-S35 (2011)
20.
Ntziachristos, V.: Going deeper than microscopy: The optical imaging frontier in biology. Nat. Methods 7, 603-614 (2010)