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Rieber, N.* ; Knapp, B.* ; Eils, R.* ; Kaderali, L.*

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens.

Bioinformatics 25, 678-679 (2009)
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SUMMARY: We present RNAither, a package for the free statistical environment R which performs an analysis of high-throughput RNA interference (RNAi) knock-down experiments, generating lists of relevant genes and pathways out of raw experimental data. The library provides a quality assessment of the signal intensities, as well as a broad range of options for data normalization, different statistical tests for the identification of significant siRNAs, and a significance analysis of the biological processes involving corresponding genes. The results of the analysis are presented as a set of HTML pages. Additionally, all values and plots are available as either text files or pdf and png files. AVAILABILITY: http://bioconductor.org/
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Publication type Article: Journal article
Document type Scientific Article
ISSN (print) / ISBN 1367-4803
Journal Bioinformatics
Quellenangaben Volume: 25, Issue: 5, Pages: 678-679 Article Number: , Supplement: ,
Publisher Oxford University Press
Publishing Place Oxford
Reviewing status Peer reviewed