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Buchner, S.* ; Schlundt, A. ; Lassak, J.* ; Sattler, M. ; Jung, K.*

Structural and functional analysis of the signal transducing linker in the pH-responsive one component system CadC of Escherichia coli.

J. Mol. Biol. 427, 2548-2561 (2015)
Postprint DOI
Open Access Green
The pH-responsive one component signaling system CadC in Escherichia coli belongs to the family of ToxR-like proteins, whose members share a conserved modular structure, with an N-terminal cytoplasmic winged helix-turn-helix DNA-binding domain being followed by a single transmembrane helix and a C-terminal periplasmic pH-sensing domain. In E. coli CadC a cytoplasmic linker comprising approximately 50 amino acids is essential for transmission of the signal from the sensor to the DNA-binding domain. However, the mechanism of transduction is poorly understood. Using NMR spectroscopy, we demonstrate here that the linker region is intrinsically disordered in solution. Furthermore, mutational analyses showed that it tolerates a range of amino acid substitutions (altering polarity, rigidity, α-helix-forming propensity), is robust to extension, but is sensitive to truncation. Indeed, truncations either reversed the expression profile of the target operon cadBA or decoupled expression from external pH altogether. CadC dimerizes via its periplasmic domain, but light scattering analysis provided no evidence for dimerization of the isolated DNA-binding domain, with or without the linker region. However, bacterial two-hybrid analysis revealed that CadC forms stable dimers in a stimulus- and linker-dependent manner, interacting only at pH<6.8. Strikingly, a variant with reversed cadBA expression profile, which lacks most of the linker, dimerizes preferentially at higher pH. Thus, we propose that the disordered CadC linker is required for transducing the pH-dependent response of the periplasmic sensor into a structural rearrangement which facilitates dimerization of the cytoplasmic CadC DNA-binding domain.
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Publication type Article: Journal article
Document type Scientific Article
Keywords Toxr ; Acid Stress ; Regulation ; Sensor ; Transcription Activator; Chemical-shifts; Pseudoalteromonas-tunicata; Lysine Decarboxylase; Vibrio-cholerae; Acid Induction; Proteins; Operon; Expression; Regulator; Sequence
ISSN (print) / ISBN 0022-2836
e-ISSN 1089-8638
Quellenangaben Volume: 427, Issue: 15, Pages: 2548-2561 Article Number: , Supplement: ,
Publisher Elsevier
Publishing Place London
Reviewing status Peer reviewed