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Platzer, A.* ; Polzin, J.* ; Rembart, K.* ; Han, P.P.* ; Rauer, D. ; Nussbaumer, T.

BioSankey: Visualization of microbial communities over time.

J. Integr. Bioinform. 15:20170063 (2018)
Verlagsversion DOI
Open Access Gold
Creative Commons Lizenzvertrag
Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners.
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Publikationstyp Artikel: Journalartikel
Dokumenttyp Wissenschaftlicher Artikel
Schlagwörter Gene Expression ; Html ; Microbiome ; Sankey ; Visualization
e-ISSN 1613-4516
Quellenangaben Band: 15, Heft: 4, Seiten: , Artikelnummer: 20170063 Supplement: ,
Verlag de Gruyter
Begutachtungsstatus Peer reviewed
Institut(e) Institute of Environmental Medicine (IEM)