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Tanaka, T.* ; Antonio, B.A.* ; Kikuchi, S.* ; Matsumoto, T.* ; Nagamura, Y.* ; Numa, H.* ; Sakai, H.* ; Wu, J.* ; Itoh, T.* ; Sasaki, T.* ; Aono, R.* ; Fujii, Y.* ; Habara, T.* ; Harada, E.* ; Kanno, M.* ; Kawahara, Y.* ; Kawashima, H.* ; Kubooka, H.* ; Matsuya, A.* ; Nakaoka, H.* ; Saichi, N.* ; Sanbonmatsu, R.* ; Sato, Y.* ; Shinso, Y.* ; Suzuki, M.* ; Takeda, J.* ; Tanino, M.* ; Todokoro, F.* ; Yamaguchi, K.* ; Yamamoto, N.* ; Yamasaki, C.* ; Imanishi, T.* ; Okido, T.* ; Tada, M.* ; Ikeo, K.* ; Tateno, Y.* ; Gojobori, T.* ; Lin, YC.* ; Wei, F.J.* ; Hsing, Y.I.* ; Zhao, Q.* ; Han, B.* ; Kramer, M.R.* ; McCombie, R.W.* ; Lonsdale, D.* ; O'Donovan, C.C.* ; Whitfield, E.J.* ; Apweiler, R.* ; Koyanagi, K.O.* ; Khurana, J.P.* ; Raghuvanshi, S.* ; Singh, N.K.* ; Tyagi, A.K.* ; Haberer, G. ; Fujisawa, M.* ; Hosokawa, S.* ; Ito, Y.* ; Ikawa, H.* ; Shibata, M.* ; Yamamoto, M.* ; Bruskiewich, R.M.* ; Hoen, D.R.* ; Bureau, T.E.* ; Namiki, N.* ; Ohyanagi, H.* ; Sakai, Y.* ; Nobushima, S.* ; Sakata, K.* ; Barrero, R.A.* ; Souvorov, A.* ; Smith-White, B.* ; Tatusova, T.* ; An, S.* ; An, G.* ; Oota, S.* ; Fuks, G.* ; Messing, J.* ; Christie, K.R.* ; Lieberherr, D.* ; Kim, H.* ; Zuccolo, A.* ; Wing, R.A.* ; Nobuta, K.* ; Green, P.J.* ; Lu, C.* ; Meyers, B.C.* ; Chaparro, C.* ; Piegu, B.* ; Panaud, O.* ; Echeverria, M.* ; Rice Annotation Project

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res. 36, D1028-D1033 (2008)
Publishers Version DOI PMC
Open Access Gold
Creative Commons Lizenzvertrag
as soon as is submitted to ZB.
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.
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Publication type Article: Journal article
Document type Scientific Article
Keywords SATIVA SSP JAPONICA; DNA TAGGING LINES; T-DNA; ORYZA-SATIVA; FUNCTIONAL GENOMICS; INSERTIONAL MUTAGENESIS; ARABIDOPSIS-THALIANA; REVERSE GENETICS; GENERATION; SEQUENCE
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