Squidpy: A scalable framework for spatial single cell analysis.
Spatial omics data are advancing the study of tissue organization and cellular communication at an unprecedented scale. Here, we present Squidpy, a Python framework that brings together tools from omics and image analysis to enable scalable description of spatial molecular data, such as transcriptome or multivariate proteins. Squidpy provides both infrastructure and numerous analysis methods that allow to efficiently store, manipulate and interactively visualize spatial omics data.
Helmholtz AI - HMGU (HAI - HMGU)
Chan Zuckerberg Initiative DAF
European Union’s Horizon 2020 research and innovation programme