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1.
Giurgiu, M. et al.: CORUM: The comprehensive resource of mammalian protein complexes2019. Nucleic Acids Res. 47, D559-D563 (2018)
2.
Flisikowska, T.* et al.: Porcine familial adenomatous polyposis model enables systematic analysis of early events in adenoma progression. Sci. Rep. 7:6613 (2017)
3.
Jaravine, V.* ; Raffegerst, S.* ; Schendel, D.J.* & Frishman, D.: Assessment of cancer and virus antigens for cross-reactivity in human tissues. Bioinformatics 33, 104-111 (2017)
4.
Marx, H.* et al.: Annotation of the domestic pig genome by quantitative proteogenomics. J. Proteome Res. 16, 2887-2898 (2017)
5.
Smida, J. et al.: Genome-wide analysis of somatic copy number alterations and chromosomal breakages in osteosarcoma. Int. J. Cancer 141, 816-828 (2017)
6.
Honigschmid, P.* & Frishman, D.: Accurate prediction of helix interactions and residue contacts in membrane proteins. J. Struct. Biol. 194, 112-123 (2016)
7.
Karabulut, N.P.* & Frishman, D.: Sequence- and structure-based analysis of tissue-specific phosphorylation sites. PLoS ONE 11:e0157896 (2016)
8.
Kostareva, A.* et al.: Genetic spectrum of idiopathic restrictive cardiomyopathy uncovered by next-generation sequencing. PLoS ONE 11:e0163362 (2016)
9.
Zhang, Y.* ; Xu, H.* & Frishman, D.: Genomic determinants of somatic copy number alterations across human cancers. Hum. Mol. Genet. 25, 1019-1030 (2016)
10.
Haase, K.* ; Raffegerst, S.H. ; Schendel, D.J. & Frishman, D.: Expitope: A web server for epitope expression. Bioinformatics 31, 1854-1856 (2015)
11.
Haase, K.* ; Mösch, A.* & Frishman, D.: Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data. BMC Med. Genomics 8:71 (2015)
12.
Karabulut, N.P.* & Frishman, D.: Tissue-specific sequence and structural environments of lysine acetylation sites. J. Struct. Biol. 191, 39-48 (2015)
13.
Kaufmann, S.* et al.: Inter-chromosomal contact networks provide insights into mammalian chromatin organization. PLoS ONE 10:e0126125 (2015)
14.
Kristensen, D.M.* ; Saeed, U. ; Frishman, D. & Koonin, E.V.*: A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. BMC Bioinformatics 16:380 (2015)
15.
Sokolenko, A.P.* et al.: Identification of novel hereditary cancer genes by whole exome sequencing. Cancer Lett. 369, 274-288 (2015)
16.
Blohm, P. et al.: Negatome 2.0: A database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. Nucleic Acids Res. 42, D396-D400 (2014)
17.
Budziszewska, M.* ; Wieczorek, P.* ; Zhang, Y.* ; Frishman, D. & Obrepalska-Steplowska, A.*: Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3'-untranslated region of genomic RNA1. Virus Res. 185, 47-52 (2014)
18.
Kaufmann, S.* & Frishman, D.: Analysis of micro-rearrangements in 25 eukaryotic species pairs by SyntenyMapper. PLoS ONE 9:e112341 (2014)
19.
März, M.* et al.: Challenges in RNA virus bioinformatics. Bioinformatics 30, 1793-1799 (2014)
20.
Chursov, A.* ; Kopetzky, S.J.* ; Bocharov, G.* ; Frishman, D. & Shneider, A.*: RNAtips: Analysis of temperature-induced changes of RNA secondary structure. Nucleic Acids Res. 41, W486-W491 (2013)