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21.
Chursov, A.* ; Frishman, D. & Shneider, A.*: Conservation of mRNA secondary structures may filter out mutations in Escherichia coli evolution. Nucleic Acids Res. 41, 7854-7860 (2013)
22.
Goebels, F.* & Frishman, D.: Prediction of protein interaction types based on sequence and network features. BMC Syst. Biol. 7:S5 (2013)
23.
Ivankov, D.N.* et al.: How many signal peptides are there in bacteria? Environ. Microbiol. 15, 983-990 (2013)
24.
Ivankov, D.N.* et al.: QARIP: A web server for quantitative proteomic analysis of regulated intramembrane proteolysis. Nucleic Acids Res. 41, W459-W464 (2013)
25.
Neumann, S.* ; Fuchs, A.* ; Hummel, B.* & Frishman, D.: Classification of α-helical membrane proteins using predicted helix architectures. PLoS ONE 8:e77491 (2013)
26.
Tyanova, S.* ; Cox, J.* ; Olsen, J.* ; Mann, M.* & Frishman, D.: Phosphorylation variation during the cell cycle scales with structural propensities of proteins. PLoS Comput. Biol. 9:e1002842 (2013)
27.
Chursov, A.* et al.: Sequence-structure relationships in yeast mRNAs. Nucleic Acids Res. 40, 956-962 (2012)
28.
Chursov, A.* et al.: Specific temperature-induced perturbations of secondary mRNA structures are associated with the cold-adapted temperature-sensitive phenotype of influenza A virus. RNA Biol. 9, 1266-1274 (2012)
29.
Payne, S.H.* et al.: Unexpected diversity of signal peptides in prokaryotes. mBio 3:e00339-12 (2012)
30.
Smialowski, P. ; Doose, G.* ; Torkler, P.* ; Kaufmann, S.* & Frishman, D.: PROSO II - a new method for protein solubility prediction. FEBS J. 279, 2192-2200 (2012)
31.
Luo, Q.* ; Pagel, P. ; Vilne, B.* & Frishman, D.: DIMA 3.0: Domain Interaction Map. Nucleic Acids Res. 39, 1, D724-D729 (2011)
32.
Theis, F.J. ; Latif, N.* ; Wong, P. & Frishman, D.: Complex principal component and correlation structure of 16 yeast genomic variables. Mol. Biol. Evol. 28, 2501-2512 (2011)
33.
Kowarsch, A. ; Fuchs, A.* ; Frishman, D. & Pagel, P.: Correlated mutations: A hallmark of phenotypic amino acid substitutions. PLoS Comput. Biol. 6:e1000923 (2010)
34.
Mewes, H.-W. et al.: MIPS: Curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39, 1, D220-D224 (2010)
35.
Smialowski, P. ; Frishman, D. & Kramer, S.*: Pitfalls of supervised feature selection. Bioinformatics 26, 440-443 (2010)
36.
Smialowski, P. et al.: The Negatome database: A reference set of non-interacting protein pairs. Nucleic Acids Res. 38, 1, D540-D544 (2010)
37.
Smialowski, P. & Frishman, D.: Protein crystallizability. Methods Mol. Biol. 609, 385-400 (2010)
38.
Sturm, M. ; Hackenberg, M.* ; Langenberger, D.* & Frishman, D.: TargetSpy: A supervised machine learning approach for microRNA target prediction. BMC Bioinformatics 11:292 (2010)
39.
Antranikian, G.* et al.: Rapid access to genes of biotechnologically useful enzymes by partial genome sequencing: The thermoalkaliphile Anaerobranca gottschalkii. J. Mol. Microbiol. Biotechnol. 16, 81-90 (2009)
40.
Ilyinskii, P.O.* et al.: Importance of mRNA secondary structural elements for the expression of influenza virus genes. OMICS 13, 421-430 (2009)