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41.
Loewenstein, Y.* et al.: Protein function annotation by homology-based inference. Genome Biol. 10:207 (2009)
42.
Grimm, M.* et al.: Cellulose as an extracellular matrix component present in Enterobacter sakazakii biofilms. J. Food Prot. 71, 13-18 (2008)
43.
Ishihama, Y.* et al.: Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics 9:102 (2008)
44.
Mewes, H.-W. et al.: MIPS: Analysis and annotation of genome information in 2007. Nucleic Acids Res. 36, D196-D201 (2008)
45.
Pagel, P. et al.: DIMA 2.0 - predicted and known domain interactions. Nucleic Acids Res. 36, D651-655 (2008)
46.
Schmidt, T. & Frishman, D.: Assignment of isochores for all completely sequenced vertebrate genomes using a consensus. Genome Biol. 9:R104 (2008)
47.
Walter, M.C. et al.: Pedant covers all complete RefSeq genomes. Nucleic Acids Res. 37, D408-D411 (2008)
48.
Wong, P. et al.: An evolutionary and structural characterization of mammalian protein complex organization. BMC Genomics 9:629 (2008)
49.
Wong, P. & Frishman, D.: Designability and Disease. In: Chen, E.H.* [Eds.]:. Totowa, NJ: Humana Press, 2008. 491-504 (Methods Mol. Biol. ; 484)
50.
Artamonova, I.I. ; Frishman, G. & Frishman, D.: Applying negative rule mining to improve genome annotation. BMC Bioinformatics 8:261 (2007)
51.
Frishman, D.: Protein annotation at genomic scale: the current status. Chem. Rev. 107, 3448-3466 (2007)
52.
Pagel, P. ; Strack, N.* ; Oesterheld, M.* ; Stuempflen, V. & Frishman, D.: Computational prediction of domain interactions. Methods Mol. Biol. 396, 3-15 (2007)
53.
Pagel, P. ; Strack, N.* ; Oesterheld, M.* ; Stuempflen, V. & Frishman, D.: Computational prediction of domain interactions. In: Bergman, N.H.* [Eds.]:. Totowa, NJ: Humana Press, 2007. 3-16 (Methods Mol. Biol. ; 396)
54.
Riley, M.L. et al.: PEDANT genome database: 10 years online. Nucleic Acids Res. 35, D354-D357 (2007)
55.
Schmidt, T.* ; Hombach, M.* & Frishman, D.: Comparative analysis of isochores in mammalian genomes. In: Falter, C.* [Eds.]: Proceedings (German Conference on Bioinformatics. GCB2007, Potsdam, Germany, 26.09.-28.09.2007). Bonn: Köllen, 2007. 6-7 (Lecture Notes in Informatics ; Vol. 115)
56.
Lehner, A.* et al.: Molecular characterization of the alpha-glucosidase activity in Enterobacter sakazakii reveals the presence of a putative gene cluster for palatinose metabolism. Syst. Appl. Microbiol. 29, 609-625 (2006)
57.
Lehner, A.* et al.: Cloning and characterization of Enterobacter sakazakii pigment genes and in situ spectroscopic analysis of the pigment. FEMS Microbiol. Lett. 265, 244-248 (2006)
58.
Mewes, H.-W. et al.: MIPS: Analysis and annotation of proteins from whole genomes in 2005. Nucleic Acids Res. 34, D169-D172 (2006)
59.
Pagel, P. ; Oesterheld, M. ; Stuempflen, V. & Frishman, D.: The DIMA web resource-exploring the protein domain network. Bioinformatics 22, 997-998 (2006)
60.
Ruepp, A. et al.: The mouse functional genome database (MfunGD) :Functional annotation of proteins in the light of their cellular context. Nucleic Acids Res. 34, D568–D571 (2006)