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Marr, C. ; Strasser, M. ; Schwarzfischer, M. ; Schroeder, T. & Theis, F.J.: Multi-scale modeling of GMP differentiation based on single-cell genealogies. FEBS J. 279, 3488-3500 (2012)
Sonnenschein, N.* ; Marr, C. & Hütt, M.-T.*: A topological characterization of medium-dependent essential metabolic reactions. Metabolites 2, 632-647 (2012)
Strasser, M. ; Theis, F.J. & Marr, C.: Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression. Biophys. J. 102, 19-29 (2012)
Kowarsch, A. ; Preusse, M. ; Marr, C. & Theis, F.J.: miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. RNA 17, 809-819 (2011)
Krumsiek, J. ; Marr, C. ; Schroeder, T. & Theis, F.J.: Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PLoS ONE 6:e22649 (2011)
Schwarzfischer, M. et al.: Efficient fluorescence image normalization for time lapse movies. In: Proceedings (Microscopic Image Analysis with Applications in Biology, 2nd September 2011, Heidelberg, Germany). Heidelberg: MIAAB, 2011. http://www.miaab.org/miaab-2011-
Kowarsch, A. ; Marr, C. ; Schmidl, D. ; Ruepp, A. & Theis, F.J.: Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways. PLoS ONE 5:e11154 (2010)
Liebovitch, L.S.* ; Shehadeh, L.A.* ; Jirsa, V.K.* ; Hütt, M.-T.* & Marr, C.: Determining the properties of gene regulatory networks from expression data. In: Das, S.* ; Caragea, D.* ; Welch, S.* ; Hsu, W.H.* [Eds.]: Handbook of Research on Computational Methodologies in Gene Regulatory Networks. IGI Global, 2010. 405-428
Lutter, D. ; Marr, C. ; Krumsiek, J. ; Lang, E.W.* & Theis, F.J.: Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. BMC Genomics 11:224 (2010)
Marr, C. ; Theis, F.J. ; Liebovitch, L.S.* & Hütt, M.-T.*: Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli. PLoS Comput. Biol. 6, 31:e1000836 (2010)
Wittmann, D.M. ; Marr, C. & Theis, F.J.: Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks. J. Theor. Biol. 266, 436-448 (2010)
Marr, C. & Hütt, M.-T.*: Outer-totalistic cellular automata on graphs. Phys. Lett. A 373, 546-549 (2009)
Webb, K.J. et al.: Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Genome Biol. 10:R81 (2009)
Marr, C. ; Geertz, M.* ; Hütt, M.-T.* & Muskhelisvili, G.*: Dissecting the logical types of network control in gene expression profiles. BMC Syst. Biol. 2:18 (2008)