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1.
Kowarsch, A.: The impact of microRNAs on signaling pathways: From general perspectives to a computational model of the JAK-STAT pathway. München, Technische Universität München, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2012, 218 S.
2.
Ruepp, A. ; Kowarsch, A. & Theis, F.J.: PhenomiR: MicroRNAs in human diseases and biological processes. Methods Mol. Biol. 822, 249-260 (2012)
3.
Kowarsch, A. ; Preusse, M. ; Marr, C. & Theis, F.J.: miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. RNA 17, 809-819 (2011)
4.
Raia, V.* et al.: Dynamic mathematical modeling of IL13-induced signaling in Hodgkin and primary mediastinal B-Cell lymphoma allows prediction of therapeutic targets. Cancer Res. 71, 693-704 (2011)
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Sass, S. et al.: MicroRNAs coordinately regulate protein complexes. BMC Syst. Biol. 5:136 (2011)
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Balluff, B. et al.: Classification of HER2/neu status in gastric cancer using a breast-cancer derived proteome classifier. J. Proteome Res. 9, 6317-6322 (2010)
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Blöchl, F. ; Kowarsch, A. & Theis, F.J.: Second-order source separation based on prior knowledge realized in a graph model. In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 434-441 (Lecture Notes Comp. Sci. ; 6365)
8.
Konopka, W.* et al.: MicroRNA loss enhances learning and memory in mice. J. Neurosci. 30, 14835-14842 (2010)
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Kowarsch, A. et al.: Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation. BMC Bioinformatics 11:585 (2010)
10.
Kowarsch, A. ; Marr, C. ; Schmidl, D. ; Ruepp, A. & Theis, F.J.: Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways. PLoS ONE 5:e11154 (2010)
11.
Kowarsch, A. ; Fuchs, A.* ; Frishman, D. & Pagel, P.: Correlated mutations: A hallmark of phenotypic amino acid substitutions. PLoS Comput. Biol. 6:e1000923 (2010)
12.
Ruepp, A. et al.: PhenomiR: A knowledgebase for microRNA expression in diseases and biological processes. Genome Biol. 11:R6 (2010)