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Huerta-Cepas, J.* et al.: eggNOG 4.5: A hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44, D286-D293 (2016)
Elsner, M. et al.: Comment on the German draft legislation on hydraulic fracturing: The need for an accurate state of knowledge and for independent scientific research. Environ. Sci. Technol. 49, 6367-6369 (2015)
Haslbeck, V.* et al.: Selective activators of protein phosphatase 5 target the auto-inhibitory mechanism. Biosci. Rep. 35:e00210 (2015)
Stempfhuber, B. et al.: pH as a driver for ammonia-oxidizing Archaea in forest soils. Microb. Ecol. 69, 879-883 (2015)
Weinmaier, T.* et al.: Genomic factors related to tissue tropism in Chlamydia pneumoniae infection. BMC Genomics 16:268 (2015)
Arnold, R.* ; Goldenberg, F.* ; Mewes, H.-W. & Rattei, T.*: SIMAP - the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. Nucleic Acids Res. 42, D279-D284 (2014)
Hanak, A.M.* et al.: Draft genome sequence of the growth-promoting endophyte Paenibacillus sp. P22, isolated from Populus. Genome Announc. 2:e00276-14 (2014)
März, M.* et al.: Challenges in RNA virus bioinformatics. Bioinformatics 30, 1793-1799 (2014)
Walker, A. et al.: Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. ISME J. 8, 2380-2396 (2014)
Hochwind, K. et al.: Draft genome sequence of Lactobacillus casei W56. J. Bacteriol. 194:6638 (2012)
Kuffner, M.* et al.: Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing. FEMS Microbiol. Ecol. 82, 551-562 (2012)
Bergmann, F. et al.: Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47. Environ. Microbiol. 13, 1125-1137 (2011)
Abu Laban, N. ; Selesi, D. ; Rattei, T.* ; Tischler, P.* & Meckenstock, R.U.: Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture. Environ. Microbiol. 12, 2783-2796 (2010)
Mewes, H.-W. et al.: MIPS: Curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res. 39, 1, D220-D224 (2010)
Rattei, T.* et al.: SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. Nucleic Acids Res. 38, 1, D223-D226 (2010)
Selesi, D. et al.: Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47. J. Bacteriol. 192, 295-306 (2010)
Smialowski, P. et al.: The Negatome database: A reference set of non-interacting protein pairs. Nucleic Acids Res. 38, 1, D540-D544 (2010)
Vogel, J.P.* et al.: Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463, 763-768 (2010)
Yu, Z.* et al.: Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 107, 17809-17814 (2010)
Arnold, R.* et al.: Sequence-based prediction of type III secreted proteins. PLoS Pathog. 5:e1000376 (2009)