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Angelidis, I. et al.: An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. Nat. Commun. 10:963 (2019)
Bastidas-Ponce, A. et al.: Massive single-cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis. Development, accepted (2019)
Büttner, M. ; Miao, Z.* ; Wolf, F.A. ; Teichmann, S.A.* & Theis, F.J.: A test metric for assessing single-cell RNA-seq batch correction. Nat. Methods 16, 43-49 (2019)
Czamara, D.* et al.: Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns. Nat. Commun. 10:2548 (2019)
Eraslan, G. ; Simon, L. ; Mircea, M. ; Müller, N.S. & Theis, F.J.: Single-cell RNA-seq denoising using a deep count autoencoder. Nat. Commun. 10:390 (2019)
Eraslan, G. ; Avsec, Ž.* ; Gagneur, J.* & Theis, F.J.: Deep learning: New computational modelling techniques for genomics. Nat. Rev. Genet. 20, 389-403 (2019)
Fischer, D.S. et al.: Inferring population dynamics from single-cell RNA-sequencing time series data. Nat. Biotechnol. 37, 461-468 (2019)
Förster, K. et al.: Altered relaxation times in MRI indicate bronchopulmonary dysplasia. Thorax, accepted (2019)
Fröhlich, F. et al.: Publisher Correction: Multi-experiment nonlinear mixed effectmodeling of single-cell translation kinetics after transfection. NPJ Syst. Biol. Appl. 5:11 (2019)
Hawe, J. ; Theis, F.J. & Heinig, M.: Inferring interaction networks from multi-omics data. Front. Genet. 10, accepted (2019)
Kaderali, L.* et al.: Editorial: Integrative computational systems biology approaches in immunology and medicine. Front. Microbiol. 9:3338 (2019)
Krautenbacher, N. et al.: A strategy for high-dimensional multivariable analysis classifies childhood asthma phenotypes from genetic, immunological, and environmental factors. Allergy, accepted (2019)
Laimighofer, M. et al.: Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity - indications of immune cell activation. Sci. Rep. 9:6250 (2019)
Luecken, M. & Theis, F.J.: Current best practices in single-cell RNA-seq analysis: a tutorial. Mol. Syst. Biol. 15:e8746 (2019)
Matejka, K. et al.: Dynamic modelling of an ACADS genotype in fatty acid oxidation - Application of cellular models for the analysis of common genetic variants. PLoS ONE 14:e0216110 (2019)
Schiller, H. B. et al.: The Human Lung Cell Atlas - A high-resolution reference map of the human lung in health and disease. Am. J. Respir. Cell Mol. Biol., accepted (2019)
Sheng, X.* et al.: IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nat. Commun. 10:323 (2019)
Theis, F.J. & Lickert, H.: A map of beta-cell differentiation. Nature 569, 342-343 (2019)
Thomas, J. et al.: Is the humoral immunity dispensable for the pathogenesis of psoriasis? J. Eur. Acad. Dermatol. Venereol. 33, 115-122 (2019)
Tischler, J.* et al.: Metabolic regulation of pluripotency and germ cell fate through alpha-ketoglutarate. EMBO J. 38:e99518 (2019)