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Rozman, J. et al.: Identification of genetic elements in metabolism by high-throughput mouse phenotyping.   Nat. Commun. 9:288 (2018)
Schäfer, M. et al.: Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia. Mol. Metab. 5, 67-78 (2016)
Vincendeau, M. et al.: Control of HIV replication in astrocytes by a family of highly conserved host proteins with a common Rev-interacting domain (Risp). Aids 24, 2433-2442 (2010)
Hadian, K. et al.: Identification of a heterogeneous nuclear ribonucleoprotein-recognition region in the HIV Rev protein. J. Biol. Chem. 284, 33384-33391 (2009)
Schaefer, A.* et al.: Mechanism of interferon-gamma mediated down-regulation of interleukin-10 gene expression. Mol. Immunol. 46, 1351-1359 (2009)
Werner, T.* et al.: Intestinal epithelial cell proteome from wild-type and TNF{Delta}ARE/WT mice: Effect of iron on the development of chronic ileitis. J. Proteome Res. 8, 3252-3264 (2009)
Palmieri, M.C. et al.: Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: A bioinformatics approach. J. Exp. Bot. 59, 177-186 (2008)
Döhr, S. et al.: Linking disease-associated genes to regulatory networks via promoter organization. Nucleic Acids Res. 33, 864-872 (2005)
Kramer-Hämmerle, S. ; Hahn, A.* ; Brack-Werner, R. & Werner, T.*: Elucidating effects of long-term expression of HIV-1 Nef on astrocytes by microarray, promoter, and literature analyses. Gene 358, 31-38 (2005)
Kramer-Hämmerle, S. et al.: Identification of a novel Rev-interacting cellular protein. BMC Cell Biol. 6:20 (2005)
Maier, H. et al.: LitMiner and WikiGene: Identifying problem-related key players of gene regulation using publication abstracts. Nucleic Acids Res. 33, 2, W779-W782 (2005)
Crass, T.* et al.: The Helmholtz network for bioinformatics: An integrative web portal bioinformatics resources. Bioinformatics 20, 268-270 (2004)
Naschberger, E. et al.: Nuclear factor-kB motif and interferon-alpha-stimulated response element co-operate in the activation of guanylate-binding protein-1 expression by inflammatory cytokines in endothelial cells. Biochem. J. 379, 409-420 (2004)
Rudd, S. et al.: Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression. Plant Physiol. 135, 715-722 (2004)
Werner, T.: The state of the art of mammalian promoter recognition. Brief. Bioinform. 4, 22-30 (2003)
Werner, T.: The Role of Transcription Factor Binding Sites in Promoters and Their In Silico Detection. In: Krawetz, S.A.* ; Womble, D.D.* [Eds.]: Introduction to Bioinformatics : A Theoretical and Practical Approach. Totowa, NJ: Humana Press, 2003. 523-538
Werner, T. ; Fessele, S.* ; Maier, H. & Nelson, P.J.*: Computer modeling of promoter organization as a tool to study transcriptional coregulation. FASEB J. 17, 1228-1237 (2003)
Werner, T.: Yeast expression-array analysis goes molecular. Trends Genet. 19, 467-469 (2003)
Werner, T.: Promoters can contribute to the elucidation of protein function. Trends Biotechnol. 21, 9-13 (2003)
Wolff, H. ; Brack-Werner, R. ; Neumann, M. ; Werner, T. & Schneider, R.: Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals : Application to HIV-1 INS. Nucleic Acids Res. 31, 2839-2851 (2003)