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Sieber, C.M.K. et al.: The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer. PLoS ONE 9:e110311 (2014)
Laurie, J.D.* ; Linning, R.* ; Wong, P. & Bakkeren, G.*: Do TE activity and counteracting genome defenses, RNAi and methylation, shape the sex lives of smut fungi? Plant Signal. Behav. 8:e23853 (2013)
Laurie, J.D.* et al.: Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements. Plant Cell 24, 1733-1745 (2012)
Makhnevych, T.* et al.: Hsp110 is required for spindle length control. J. Cell Biol. 198, 623-636 (2012)
Theis, F.J. ; Latif, N.* ; Wong, P. & Frishman, D.: Complex principal component and correlation structure of 16 yeast genomic variables. Mol. Biol. Evol. 28, 2501-2512 (2011)
Wong, P. et al.: FGDB: Revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Res. 39, D637-D639 (2011)
Zuccaro, A.* et al.: Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PLoS Pathog. 7:e1002290 (2011)
Dietmann, S.* ; Lee, W. ; Wong, P. ; Rodchenkov, I.* & Antonov, A.V.: CCancer: A bird's eye view on gene lists reported in cancer-related studies. Nucleic Acids Res. 38, 2, W118-W123 (2010)
Schirawski, J.* et al.: Pathogenicity determinants in smut fungi revealed by genome comparison. Science 330, 1546-1548 (2010)
Smialowski, P. et al.: The Negatome database: A reference set of non-interacting protein pairs. Nucleic Acids Res. 38, 1, D540-D544 (2010)
Antonov, A.V. ; Dietmann, S. ; Wong, P. ; Lutter, D. & Mewes, H.-W.: GeneSet2miRNA: Finding the signature of cooperative miRNA activities in the gene lists. Nucleic Acids Res. 37, Suppl. S, W323-W328 (2009)
Antonov, A.V. ; Dietmann, S. ; Wong, P. ; Igor, R. & Mewes, H.-W.: PLIPS, an automatically collected database of protein lists reported bMIPS: curated databasesy proteomics studies. J. Proteome Res. 8, 1193-1197 (2009)
Antonov, A.V. ; Dietmann, S. ; Wong, P. & Mewes, H.-W.: TICL - a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics. FEBS J. 276, 2084-2094 (2009)
Wong, P. et al.: An evolutionary and structural characterization of mammalian protein complex organization. BMC Genomics 9:629 (2008)
Wong, P. & Frishman, D.: Designability and Disease. In: Chen, E.H.* [Eds.]:. Totowa, NJ: Humana Press, 2008. 491-504 (Methods Mol. Biol. ; 484)
Wong, P. & Frishman, D.: Fold designability, distribution and disease. PLoS Comput. Biol. 2, 392-402:e40 (2006)
Wong, P. ; Fritz, A.* & Frishman, D.: Designability, aggregation propensity and duplication of disease-associated proteins. Protein Eng. Des. Sel. 18, 503-508 (2005)
Pagel, P. ; Wong, P. & Frishman, D.*: A domain interaction map based on phylogenetic profiling. J. Mol. Biol. 344, 1331-1346 (2004)
Wong, P.* ; Kolesov, G. ; Frishman, D. & Houry, W.A.*: Phylogenetic Web Profiler. Bioinformatics 19, 782-783 (2003)