Tetko, I.V.
Computing chemistry on the web.
Drug Discov. To. Techn. 10, 1497-1500 (2005)
Tetko, I.V. ; Abagyan, R.* ; Oprea, T.I.*
Surrogate data - a secure way to share corporate data.
J. Comput.-Aided Mol. Des. 19, 749-764 (2005)
Ernst, R.
PlaNet : A powerful portal for accessing plant genome data and analysis tools via web services.
GARNish 4, 4-5 (2005)
Bruggmann, R. ; Abderhalden, O.* ; Reymond, P.* ; Dudler, R.*
Analysis of epidermis- and mesophyll-specific transcript accumulation in powdery mildew-inoculated wheat leaves.
Plant Mol. Biol. 58, 247-267 (2005)
Kasuga, T.* ; Townsend, J.P.* ; Tian, C.* ; Gilbert, L.B.* ; Mannhaupt, G. ; Taylor, J.W.* ; Glass, N.L.*
Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination.
Nucleic Acids Res. 33, 6469-6485 (2005)
Artamonova, I.I. ; Frishman, G. ; Gelfand, M.S.* ; Frishman, D.
Mining sequence annotation databanks for association patterns.
Bioinformatics 21, 3, 49-57 (2005)
Wong, P. ; Fritz, A.* ; Frishman, D.
Designability, aggregation propensity and duplication of disease-associated proteins.
Protein Eng. Des. Sel. 18, 503-508 (2005)
Haberer, G. ; Gundlach, H. ; Mayer, K.F.X.
Structure and architecture of the Maize genome.
Plant Physiol. 139, 1612-1624 (2005)
Rudd, S.* ; Schoof, H. ; Mayer, K.F.X.
PlantMarkers - a database of predicted molecular markers from plants.
Nucleic Acids Res. 33, 628-632 (2005)
Wilkinson, M.* ; Schoof, H. ; Ernst, R. ; Haase, D.
BioMOBY successfully integrates distributed heterogeneous bioinformatics Web services. The plaNet exemplar case.
Plant Physiol. 138, 5-17 (2005)
Tetko, I.V. ; Gasteiger, J.* ; Todeschini, R.* ; Mauri, A.* ; Livingstone, D.* ; Ertl, P.* ; Palyulin, V.* ; Radchenko, E.* ; Zefirov, N.S.* ; Makarenko, A.S.* ; Tanchuk, V.Y.* ; Prokopenko, V.V.*
Virtual computational chemistry laboratory--design and description.
J. Comput.-Aided Mol. Des. 19, 453-463 (2005)
Tetko, I.V. ; Facius, A. ; Ruepp, A. ; Mewes, H.-W.
Super paramagnetic clustering of protein sequences.
BMC Bioinformatics 6:82 (2005)
Neverov, A.D.* ; Artamonova, I.I. ; Nurtdinov, R.N.* ; Frishman, D. ; Gelfand, M.S.* ; Mironov, A.A.*
Alternative splicing and protein function.
BMC Bioinformatics 6:266 (2005)
Hindemitt, T. ; Mayer, K.F.X.
CREDO: A web-based tool for computational detection of conserved sequence motifs in noncoding sequences.
Bioinformatics 21, 4304-4306 (2005)
Kolesov, G.
New approaches in context-based protein function prediction.
München, Technische Universität, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2005, 78 S.
Riley, M.L. ; Schmidt, T.* ; Wagner, C.* ; Mewes, H.-W. ; Frishman, D.
The PEDANT genome database in 2005.
Nucleic Acids Res. 33, D308-D310 (2005)
Kerner, M.J.* ; Naylor, D.J.* ; Ishihama, Y.* ; Maier, T.* ; Chang, H.-Ch.* ; Stines, A.P.* ; Georgopoulos, C.* ; Frishman, D. ; Hayer-Hartl, M.* ; Mann, M.* ; Hartl, U.*
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli.
Cell 122, 209-220 (2005)
Tetko, I.V. ; Brauner, B. ; Dunger-Kaltenbach, I. ; Frishman, G. ; Montrone, C. ; Fobo, G. ; Ruepp, A. ; Antonov, A.V.
MIPS bacterial genomes functional annotation benchmark dataset.
Bioinformatics 21, 2520-2521 (2005)
Wang, Y. ; Tetko, I.V. ; Hall, M.A. ; Frank, E. ; Facius, A. ; Mayer, K.F.X. ; Mewes, H.-W.
Gene selection from microarray data for cancer classification—a machine learning approach.
Comput. Biol. Chem. 29, 37-46 (2005)
Friedel, C.C.* ; Jahn, K.H.* ; Sommer, S.* ; Rudd, S.* ; Mewes, H.-W. ; Tetko, I.V.
Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.
Bioinformatics 21, 1383-1388 (2005)
Güldener, U. ; Münsterkötter, M. ; Kastenmüller, G. ; Strack, N.* ; van Helden, J.* ; Lemer, C.* ; Richelles, J.* ; Wodak, S.J.* ; García-Martínez, J.* ; Pérez-Ortín, J.E.* ; Michael, H.* ; Kaps, A.* ; Talla, E.* ; Dujon, B.* ; André, B.* ; Souciet, J.L.* ; de Montigny, J.* ; Bon, E.* ; Gaillardin, C.* ; Mewes, H.-W.
CYGD: The Comprehensive Yeast Genome Database.
Nucleic Acids Res. 33, SI, D364-368 (2005)
Facius, A. ; Englbrecht, C.C. ; Birzele, F. ; Groscurth, A. ; Benjamin, S. ; Wanka, S. ; Mewes, H.-W.
PRIME: A graphical interface for integrating genomic/proteomic databases.
Proteomics 5, 76-80 (2005)
Schoof, H. ; Spannagl, M. ; Yang, L. ; Ernst, R. ; Gundlach, H. ; Haase, H. ; Haberer, G. ; Mayer, K.F.X.
Munich Information Center for Protein Sequences Plant Genome Resources. A Framework for Integrative and Comparative Analyses.
Plant Physiol. 138, 1301-1309 (2005)
Antonov, A.V. ; Tetko, I.V. ; Kosykh, D. ; Surmeli, D. ; Mewes, H.-W.
Exploiting scale-free information from expression data for cancer classification.
Comput. Biol. Chem. 29, 288-293 (2005)
Arnold, R. ; Rattei, T.* ; Tischler, P. ; Truong, M.-D. ; Stuempflen, V. ; Mewes, H.-W.
SIMAP - The similarity matrix of proteins.
Bioinformatics 21, 42-46 (2005)
Rudd, S.* ; Tetko, I.V.
Éclair - a web service for unravelling species origin of sequences sampled from mixed host interfaces.
Nucleic Acids Res. 33, 2, W724-W727 (2005)
Pagel, P. ; Kovac, S. ; Oesterheld, M. ; Brauner, B. ; Dunger-Kaltenbach, I. ; Frishman, G. ; Montrone, C. ; Mark, P.* ; Stuempflen, V. ; Mewes, H.-W. ; Ruepp, A.
The MIPS mammalian protein-protein interaction database.
Bioinformatics 21, 832-834 (2005)