Theis, F.J. ; Meyer-Bäse, A.
Foundations of medical imaging and signal recording.
In: Biomedical Signal Analysis - Contemporary Methods and Applications. Cambridge, MA: MIT Press, 2010. 1-28
Bao, C.* ; Tian, F. ; Estrada, G.
Improved visualisation of internalised carbon nanotubes by maximising cell spreading on nanostructured substrates.
Nano Biomed. Eng. 2, 201-210 (2010)
Meyer-Bäse, A.* ; Theis, F.J. ; Emmett, M.R.*
Robust stability analysis and design under consideration of multiple feedback loops of the tryptophan regulatory network of Escherichia coli.
Adv. Exp. Med. Biol. 680, 189-197 (2010)
Dietmann, S.* ; Lee, W. ; Wong, P. ; Rodchenkov, I.* ; Antonov, A.V.
CCancer: A bird's eye view on gene lists reported in cancer-related studies.
Nucleic Acids Res. 38, 2, W118-W123 (2010)
Ruepp, A. ; Wägele, B. ; Lechner, M. ; Brauner, B. ; Dunger-Kaltenbach, I. ; Fobo, G. ; Frishman, G. ; Montrone, C. ; Mewes, H.-W.
CORUM: The comprehensive resource of mammalian protein complexes - 2009.
Nucleic Acids Res. 38, 1, D497-D501 (2010)
Kowarsch, A. ; Blöchl, F. ; Bohl, S.* ; Saile, M.* ; Gretz, N.* ; Klingmüller, U.* ; Theis, F.J.
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation.
BMC Bioinformatics 11:585 (2010)
Steri, R.* ; Rupp, M. ; Proschak, E.* ; Schroeter, T.* ; Zettl, H.* ; Hansen, K.* ; Schwarz, O.* ; Müller-Kuhrt, L.* ; Müller, K.R.* ; Schneider, G.* ; Schubert-Zsilavecz, M.*
Truxillic acid derivatives act as peroxisome proliferator-activated receptor gamma activators.
Bioorg. Med. Chem. Lett. 20, 2920-2923 (2010)
Sushko, I. ; Novotarskyi, S. ; Körner, R. ; Pandey, A.K. ; Kovalishyn, V.V.* ; Prokopenko, V.V.* ; Tetko, I.V.
Applicability domain for in silico models to achieve accuracy of experimental measurements.
J. Chemometr. 24, 202-208 (2010)
Wittmann, D.M. ; Marr, C. ; Theis, F.J.
Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks.
J. Theor. Biol. 266, 436-448 (2010)
Lorenz, P.* ; Dietmann, S. ; Wilhelm, T.* ; Koczan, D.* ; Autran, S.* ; Gad, S.* ; Wen, G.P.* ; Ding, G.H.* ; Li, Y.X.* ; Rousseau-Merck, M.F.* ; Thiesen, H.J.*
The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues.
BMC Genomics 11:206 (2010)
Sturm, M. ; Hackenberg, M.* ; Langenberger, D.* ; Frishman, D.
TargetSpy: A supervised machine learning approach for microRNA target prediction.
BMC Bioinformatics 11:292 (2010)
Krumsiek, J. ; Pölsterl, S. ; Wittmann, D.M. ; Theis, F.J.
Odefy - from discrete to continuous models.
BMC Bioinformatics 11, 1-10:233 (2010)
Smialowski, P. ; Frishman, D.
Protein crystallizability.
Methods Mol. Biol. 609, 385-400 (2010)
Gutch, H.W.* ; Maehara, T.* ; Theis, F.J.
Second order subspace analysis and simple decompositions.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 370-377 ( ; 6365)
Thiemann, C.* ; Theis, F.J. ; Grady, D.* ; Brune, R.* ; Brockmann, D.*
The structure of borders in a small world.
PLoS ONE 5:e15422 (2010)
Villa, A.E.* ; Tetko, I.V.
Cross-frequency coupling in mesiotemporal EEG recordings of epileptic patients.
J. Physiol. 104, 197-202 (2010)
Vogel, J.P.* ; Garvin, D.F.* ; Mockler, T.C.* ; Schmutz, J.* ; Rokhsar, D.* ; Bevan, M.W.* ; Barry, K.* ; Lucas, S.* ; Harmon-Smith, M.* ; Lail, K.* ; Tice, H.* ; Grimwood, J.* ; McKenzie, N.* ; Huo, N.* ; Gu, Y.Q.* ; Lazo, G.R.* ; Anderson, O.D.* ; You, F.M.* ; Luo, M.C.* ; Dvorak, J.* ; Wright, J.* ; Febrer, M.* ; Idziak, D.* ; Hasterok, R.* ; Garvin, DF.* ; Lindquist, E.* ; Wang, M.* ; Fox, SE.* ; Priest, H.D.* ; Filichkin, S.A.* ; Givan, S.A.* ; Bryant, D.W.* ; Chang, J.H.* ; Wu, H.* ; Wu, W.* ; Hsia, A.P.* ; Schnable, P.S.* ; Kalyanaraman, A.* ; Barbazuk, B.* ; Michael, T.P.* ; Hazen, S.P.* ; Bragg, J.N.* ; Laudencia-Chingcuanco, D.* ; Weng, Y.* ; Haberer, G. ; Spannagl, M. ; Mayer, K.F.X. ; Rattei, T. ; Mitros, T.* ; Lee, S.J.* ; Rose, J.K.* ; Mueller, L.A.* ; York, T.L.* ; Wicker, T.* ; Buchmann, J.P.* ; Tanskanen, J.* ; Schulman, A.H.* ; Gundlach, H.* ; Bevan, M.* ; de Oliveira, A.C.* ; Maia, L. da C.* ; Belknap, W.* ; Jiang, N.* ; Lai, J.* ; Zhu, L.* ; Ma, J.* ; Sun, C.* ; Pritham, E.* ; Salse, J.* ; Murat, F.* ; Abrouk, M.* ; Bruggmann, R.* ; Messing, J.* ; Fahlgren, N.* ; Fox, S.E.* ; Sullivan, C.M.* ; Carrington, J.C.* ; Chapman, E.J.* ; May, G.D.* ; Zhai, J.* ; Ganssmann, M.* ; Gurazada, S.G.* ; German, M.* ; Meyers, B.C.* ; Green, P.J.* ; Tyler, L.* ; Wu, J.* ; Gu, YQ.* ; Thomson, J.* ; Chen, S.* ; Scheller, H.V.* ; Harholt, J.* ; Ulvskov, P.* ; Kimbrel, J.A.* ; Bartley, L.E.* ; Cao, P.* ; Jung, K.H.* ; Sharma, M.K.* ; Vega-Sanchez, M.* ; Ronald, P.* ; Dardick, CD.* ; De, Bodt, S.* ; Verelst, W.* ; Inzé, D.* ; Heese, M.* ; Schnittger, A.* ; Yang, X.* ; Kalluri, U.C.* ; Tuskan, G.A.* ; Hua, Z.* ; Vierstra, R.D.* ; Cui, Y.* ; Ouyang, S.* ; Sun, Q.* ; Liu, Z.* ; Yilmaz, A.* ; Grotewold, E.* ; Sibout, R.* ; Hematy, K.* ; Mouille, G.* ; Höfte, H.* ; Michael, T.* ; Pelloux, J.* ; O'Connor, D.* ; Schnable, J.* ; Rowe, S.* ; Harmon, F.* ; Cass, C.L.* ; Sedbrook, J.C.* ; Byrne, M.E.* ; Walsh, S.* ; Higgins, J.* ; Li, P.* ; Brutnell, T.* ; Unver, T.* ; Budak, H.* ; Belcram, H.* ; Charles, M.* ; Chalhoub, B.* ; Baxter, I.*
Genome sequencing and analysis of the model grass Brachypodium distachyon.
Nature 463, 763-768 (2010)
Araki, S.* ; Ozerov, A.* ; Gowreesunker, V.* ; Sawada, H.* ; Theis, F.J. ; Nolte, G.* ; Lutter, D. ; Duong, N.Q.K.*
The 2010 signal separation evaluation campaign (SiSEC2010): Audio source separation.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Latent variable analysis and signal separation (Latent variable analysis and signal separation 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 114-122 (Lecture Notes Comp. Sci. ; 6365)
Araki, S.* ; Theis, F.J. ; Nolte, G.* ; Lutter, D. ; Ozerov, A.* ; Gowreesunker, V.* ; Sawada, H.* ; Duong, N.Q.K.*
The 2010 signal separation evaluation campaign (SiSEC2010): Biomedical source separation.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 123-130 (Lecture Notes Comp. Sci. ; 6365)
Gutch, H.W.* ; Gruber, P.* ; Theis, F.J.
ICA over finite fields.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 645-652 ( ; 6365)
Blöchl, F. ; Kowarsch, A. ; Theis, F.J.
Second-order source separation based on prior knowledge realized in a graph model.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 434-441 (Lecture Notes Comp. Sci. ; 6365)
Mewes, H.-W. ; Ruepp, A. ; Theis, F.J. ; Rattei, T.* ; Walter, M.C. ; Frishman, D. ; Suhre, K. ; Spannagl, M. ; Mayer, K.F.X. ; Stuempflen, V. ; Antonov, A.
MIPS: Curated databases and comprehensive secondary data resources in 2010.
Nucleic Acids Res. 39, 1, D220-D224 (2010)
Theis, F.J. ; Müller, N.S.* ; Plant, C.* ; Böhm, C.*
Robust second-order source separation identifies experimental responses in biomedical imaging.
In: Vigneron, V.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Heidelberg: Springer, 2010. 466-473 (LNCS; 6365)
Theis, F.J.
Colored subspace analysis: Dimension reduction based on a signal's autocorrelation structure.
IEEE Trans. Circuits Syst. I-Regul. Pap. 57, 1463-1474 (2010)
Greeff, M. ; Schmid-Hempel, P.*
Influence of co-evolution with a parasite, Nosema whitei, and population size on recombination rates and fitness in the red flour beetle, Tribolium castaneum.
Genetica 138, 737-744 (2010)
Weikard, R.* ; Altmaier, E. ; Suhre, K. ; Weinberger, K.M.* ; Hammon, H.M.* ; Albrecht, E.* ; Setoguchi, K.* ; Takasuga, A.* ; Kühn, C.*
Metabolomic profiles indicate distinct physiological pathways affected by two loci with major divergent effect on Bos taurus growth and lipid deposition.
Physiol. Genomics 42A, 79-88 (2010)
Hartsperger, M.L. ; Blöchl, F. ; Stuempflen, V. ; Theis, F.J.
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs.
BMC Bioinformatics 11:522 (2010)
Kowarsch, A. ; Marr, C. ; Schmidl, D. ; Ruepp, A. ; Theis, F.J.
Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways.
PLoS ONE 5:e11154 (2010)
Schirawski, J.* ; Mannhaupt, G. ; Münch, K.* ; Brefort, T.* ; Schipper, K.* ; Doehlemann, G.* ; di Stasio, M.* ; Rössel, N.* ; Mendoza-Mendoza, A.* ; Pester, D.* ; Müller, O.* ; Winterberg, B.* ; Meyer, E.* ; Ghareeb, H.* ; Wollenberg, T.* ; Münsterkötter, M. ; Wong, P. ; Walter, M. ; Stukenbrock, E.* ; Güldener, U. ; Kahmann, R.*
Pathogenicity determinants in smut fungi revealed by genome comparison.
Science 330, 1546-1548 (2010)
Schallau, A.* ; Arzenton, F.* ; Johnston, A.J.* ; Hähnel, U.* ; Koszegi, D.* ; Blattner, F.R.* ; Altschmied, L.* ; Haberer, G. ; Barcaccia, G.* ; Bäumlein, H.*
Identification and genetic analysis of the APOSPORY locus in Hypericum perforatum L.
Plant J. 62, 773-784 (2010)
Liebovitch, L.S.* ; Shehadeh, L.A.* ; Jirsa, V.K.* ; Hütt, M.-T.* ; Marr, C.
Determining the properties of gene regulatory networks from expression data.
In: Das, S.* ; Caragea, D.* ; Welch, S.* ; Hsu, W.H.* [Eds.]: Handbook of Research on Computational Methodologies in Gene Regulatory Networks. IGI Global, 2010. 405-428
Blöchl, F. ; Hartsperger, M.L. ; Stuempflen, V. ; Theis, F.J.
Uncovering the structure of heterogeneus biological data: Fuzzy graph partitioning in the k-partite setting.
In: Schomburg, D.* ; Grote, A.* [Eds.]: Proceedings (German Conference on Bioinformatics 2010). Bonn: Ges. f. Inform., 2010. 31-40 ( ; P-173)
Antonov, A.V.
Mining protein lists from proteomics studies: Applications for drug discovery.
Expert Opin. Drug Discov. 5, 323-331 (2010)
Rupp, M. ; Schneider, G.*
Graph kernels for molecular similarity.
Mol. Inform. 29, 266-273 (2010)
Ruepp, A. ; Kowarsch, A. ; Schmidl, D. ; Buggenthin, F. ; Brauner, B. ; Dunger, I. ; Fobo, G. ; Frishman, G. ; Montrone, C. ; Theis, F.J.
PhenomiR: A knowledgebase for microRNA expression in diseases and biological processes.
Genome Biol. 11:R6 (2010)
Sushko, I. ; Novotarskyi, S. ; Körner, R. ; Pandey, A.K. ; Cherkasov, A.* ; Li, J.* ; Gramatica, P.* ; Hansen, K.* ; Schroeter, T.* ; Müller, K.R.* ; Xi, L.* ; Liu, H.* ; Yao, X.* ; Öberg, T.* ; Hormozdiari, F.* ; Dao, P.* ; Sahinalp, C.* ; Todeschini, R.* ; Polishchuk, P.* ; Artemenko, A.* ; Kuz'min, V.* ; Martin, T.M.* ; Young, D.M.* ; Fourches, D.* ; Muratov, E.* ; Tropsha, A.* ; Baskin, I.* ; Horvath, D.* ; Marcou, G.* ; Müller, C.* ; Varnek, A.* ; Prokopenko, V.V.* ; Tetko, I.V.
Applicability domains for classification problems: Benchmarking of distance to models for ames mutagenicity set.
J. Chem. Inf. Model. 50, 2094-2111 (2010)
Büttner, F.A. ; Ellwanger, D.C. ; Mewes, H.-W. ; Stuempflen, V.
Large scale analysis reveals novel insights in the characteristics of miRNA targeting.
In: Schomburg, D.* ; Grote, A.* [Eds.]: Proceedings (German Conference on Bioinformatics 2010). Bonn: Ges. f. Inform., 2010.
Haack, T.B. ; Danhauser, K. ; Haberberger, B. ; Hoser, J.D.S. ; Strecker, V.* ; Boehm, D.* ; Uziel, G.* ; Lamantea, E.* ; Invernizzi, F.* ; Poulton, J.* ; Rolinski, B.* ; Iuso, A. ; Biskup, S.* ; Schmidt, T. ; Mewes, H.-W. ; Wittig, I.* ; Meitinger, T. ; Zeviani, M.* ; Prokisch, H.
Exome sequencing identifies ACAD9 mutations as a cause of complex I deficiency.
Nat. Genet. 42, 1131-1134 (2010)
Konopka, W.* ; Kiryk, A.* ; Novak, M.* ; Herwerth, M.* ; Parkitna, J.R.* ; Wawrzyniak, M.* ; Kowarsch, A. ; Michaluk, P.* ; Dzwonek, J.* ; Arnsperger, T.* ; Wilczynski, G.* ; Merkenschlager, M.* ; Theis, F.J. ; Köhr, G.* ; Kaczmarek, L.* ; Schütz, G.*
MicroRNA loss enhances learning and memory in mice.
J. Neurosci. 30, 14835-14842 (2010)
Mewes, H.-W. ; Wachinger, B. ; Stuempflen, V.
Perspectives of a systems biology of the synapse: How to transform an indefinite data space into a model?
Pharmacopsychiatry 43, 1, S2-S8 (2010)
Plant, C.* ; Theis, F.J. ; Meyer-Bäse, A.* ; Böhm, C.*
Information-theoretic model selection for independent components.
In: Vigneron, V.* ; Zarzoso, V.* ; Moreau, E.* [Eds.]: Proceedings (Latent variable analysis and signal separation : 9th international conference, 27-30 September 2010, St. Malo, France). Berlin: Springer, 2010. 254-262 (Lecture Notes Comp. Sci. ; 6365)
Blöchl, F. ; Theis, F.J. ; Vega-Redondo, F.* ; Fisher, E.O'N.*
Which sectors of a modern economy are most central?
In: Empirical and theoretical methods. München: ifo Institut für Wirtschaftsforschung e.V., 2010. 1-20 (CESifo working paper series ; 3175)
Theis, F.J. ; Meyer- Bäse, A.*
Biomedical signal analysis: Contemporary methods and applications.
Cambridge, Mass.: MIT Press, 2010. 432 S.
Steri, R.* ; Schneider, P* ; Klenner, A.* ; Rupp, M. ; Kriegl, J.M.* ; Schubert-Zsilavecz, M.* ; Schneider, G.
Target profile prediction: Cross-activation of peroxisome proliferator-activated receptor (PPAR) and farnesoid X receptor (FXR.)
Mol. Inform. 29, 287-292 (2010)
Meyer-Bäse, A.* ; Plant, C.* ; Cappendijk, S.* ; Theis, F.J.
Robust stability analysis of multi-time scale genetic regulatory networks under parametric uncertainties.
In: Proceedings (BIOCOMP'10 - The 2010 International Conference on Bioinformatics & Computational Biology). Las Vegas (Nevada): CSREA Press, 2010.
Lutter, D. ; Marr, C. ; Krumsiek, J. ; Lang, E.W.* ; Theis, F.J.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
BMC Genomics 11:224 (2010)
Grisel, N.* ; Zoller, S.* ; Künzli-Gontarczyk, M.* ; Lampart, T.* ; Münsterkötter, M. ; Brunner, I.* ; Bovet, L.* ; Metraux, J.-P.* ; Sperisen, C.*
Transcriptome responses to aluminum stress in roots of aspen (Populus tremula).
BMC Plant Biol. 10, 185 (2010)
Antonov, A.V. ; Schmidt, E.E.* ; Dietmann, S. ; Krestyaninova, M.* ; Hermjakob, H.*
R spider: A network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.
Nucleic Acids Res. 38, 2, W78-W83 (2010)
Kreuzpointner, L.* ; Simon, P.* ; Theis, F.J.
The ad coefficient as a descriptive measure of the within-group agreement of ratings.
Br. J. Math. Stat. Psychol. 63, 341-360 (2010)
Hahnke, V.* ; Rupp, M. ; Krier, M.* ; Rippmann, F.* ; Schneider, G.*
Pharmacophorealignment search tool: Influence of canonical atom labeling on similarity searching.
J. Comput. Chem. 31, 2810-2826 (2010)
Arnold, R.* ; Jehl, A.* ; Rattei, T.*
Targeting effectors: the molecular recognition of Type III secreted proteins.
Microbes Infect. 12, 346-358 (2010)
International Arabidopsis Informatics Consortium (Mayer, K.F.X.)
An international bioinformatics infrastructure to underpin the Arabidopsis community.
Plant Cell 22, 2530-2536 (2010)
Lang, S.* ; Gruber, K.* ; Mihajlovic, S.* ; Arnold, R.* ; Gruber, C.J.* ; Steinlechner, S.* ; Jehl, M.A.* ; Rattei, T.* ; Fröhlich, K.U.* ; Zechner, E.L.*
Molecular recognition determinants for type IV secretion of diverse families of conjugative relaxases.
Mol. Microbiol. 78, 1539-1555 (2010)
Arnold, R.C.
Development of computational models of the chlamydial interactomes and of bacterial secreted proteins.
München, Technische Universität, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2010, 232 S.
Barnickel, T.
Large scale knowledge extraction from biomedical literature based on semantic role labeling.
München, Technische Universität, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2010, 169 S.
Lee, W.
Comprehensive discovery of fungal gene clusters: Unexpected co-work reflected at the genomic level.
München, Technische Universität, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2010, 125 S.
Sturm, M.
Prediction and analysis of microRNAs and their targets in eukaryotic genomes.
München, Technische Universität, Fakultät Wissenschaftszentrum Weihenstephan, Diss., 2010, 119 S.
Lucio, M. ; Fekete, A. ; Weigert, C.* ; Wägele, B. ; Zhao, X.J.* ; Chen, J.* ; Fritsche, A.* ; Häring, H.-U.* ; Schleicher, E.D.* ; Xu, G.W.* ; Schmitt-Kopplin, P. ; Lehmann, R.*
Insulin sensitivity is reflected by characteristic metabolic fingerprints - a Fourier transform mass spectrometric non-targeted metabolomics approach.
PLoS ONE 5:e13317 (2010)
Yu, Z.* ; Haberer, G. ; Matthes, M.* ; Rattei, T.* ; Mayer, K.F.X. ; Gierl, A.* ; Torres-Ruiz, R.A.*
Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana.
Proc. Natl. Acad. Sci. U.S.A. 107, 17809-17814 (2010)
Schinko, T.* ; Berger, H.* ; Lee, W. ; Gallmetzer, A.* ; Pirker, K.* ; Pachlinger, R.* ; Buchner, I.* ; Reichenauer, T.* ; Güldener, U. ; Strauss, J.
Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism.
Mol. Microbiol. 78, 720-738 (2010)
Rupp, M. ; Körner, R. ; Tetko, I.V.
Estimation of acid dissociation constants using graph kernels.
Mol. Inform. 29, 731-741 (2010)
Hartsperger, M.L. ; Strache, R. ; Stuempflen, V.
HiNO: An approach for inferring hierarchical organization from regulatory networks.
PLoS ONE 5:e13698 (2010)
Suhre, K. ; Meisinger, C. ; Döring, A. ; Altmaier, E. ; Belcredi, P. ; Gieger, C. ; Chang, D.* ; Milburn, M.V.* ; Gall, W.E.* ; Weinberger, K.M.* ; Mewes, H.-W. ; Hrabě de Angelis, M. ; Wichmann, H.-E. ; Kronenberg, F.* ; Adamski, J. ; Illig, T.
Metabolic footprint of diabetes: A multiplatform metabolomics study in an epidemiological setting.
PLoS ONE 5:e13953 (2010)
Balluff, B. ; Elsner, M. ; Kowarsch, A. ; Rauser, S. ; Meding, S. ; Schuhmacher, C.* ; Feith, M.* ; Herrmann, K.* ; Röcken, C.* ; Schmid, R.M.* ; Höfler, H. ; Walch, A.K. ; Ebert, M.P.*
Classification of HER2/neu status in gastric cancer using a breast-cancer derived proteome classifier.
J. Proteome Res. 9, 6317-6322 (2010)
Marr, C. ; Theis, F.J. ; Liebovitch, L.S.* ; Hütt, M.-T.*
Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
PLoS Comput. Biol. 6, 31:e1000836 (2010)
Ansorg, M. ; Blöchl, F. ; zu Castell, W. ; Theis, F.J. ; Wittmann, D.M.
Gene regulation at the Mid-Hindbrain Boundary: Study of a mathematical model in the stationary limit.
Int. J. Biomath. Biostat. 1, 9-21 (2010)
Kowarsch, A. ; Fuchs, A.* ; Frishman, D. ; Pagel, P.
Correlated mutations: A hallmark of phenotypic amino acid substitutions.
PLoS Comput. Biol. 6:e1000923 (2010)
Bhaskar, S.* ; Tian, F. ; Stöger, T. ; Kreyling, W.G. ; de la Fuente, J.M.* ; Grazu, V.* ; Borm, P.* ; Estrada, G.G. ; Ntziachristos, V. ; Razansky, D.
Multifunctional Nanocarriers for diagnostics, drug delivery and targeted treatment across blood-brain barrier: Perspectives on tracking and neuroimaging.
Part. Fibre Toxicol. 7:3 (2010)
Rattei, T.* ; Tischler, P.* ; Götz, S.* ; Jehl, M.A.* ; Hoser, J.D.S.* ; Arnold, R.* ; Conesa, A.* ; Mewes, H.-W.
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.
Nucleic Acids Res. 38, 1, D223-D226 (2010)
Alphonse, S.* ; Durand, E.* ; Douzi, B.* ; Wägele, B. ; Darbon, H.* ; Filloux, A.* ; Voulhoux, R.* ; Bernard, C.*
Structure of the Pseudomonas aeruginosa XcpT pseudopilin, a major component of the type II secretion system.
J. Struct. Biol. 169, 75-80 (2010)
Illig, T. ; Gieger, C. ; Zhai, G.J.* ; Römisch-Margl, W. ; Wang-Sattler, R. ; Prehn, C. ; Altmaier, E. ; Kastenmüller, G. ; Kato, B.S.* ; Mewes, H.-W. ; Meitinger, T. ; Hrabě de Angelis, M. ; Kronenberg, F.* ; Soranzo, N.* ; Wichmann, H.-E. ; Spector, T.D.* ; Adamski, J. ; Suhre, K.
A genome-wide perspective of genetic variation in human metabolism.
Nat. Genet. 42, 137-141 (2010)
Das, M.* ; Reichman, J.R.* ; Haberer, G. ; Welzl, G. ; Aceituno, F.F.* ; Mader, M.T. ; Watrud, L.S.* ; Pfleeger, T.G.* ; Gutiérrez, R.A.* ; Schäffner, A. ; Olszyk, D.M.*
A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus.
Plant Mol. Biol. 72, 545-556 (2010)
Franke, R.* ; Theis, F.J. ; Klamt, S.*
From binary to multivalued to continuous models: The lac operon as a case study.
J. Integr. Bioinform. 7:151 (2010)
Smialowski, P. ; Pagel, P. ; Wong, P. ; Brauner, B. ; Dunger, I. ; Fobo, G. ; Frishman, G. ; Montrone, C. ; Rattei, T.* ; Frishman, D. ; Ruepp, A.
The Negatome database: A reference set of non-interacting protein pairs.
Nucleic Acids Res. 38, 1, D540-D544 (2010)
Smialowski, P. ; Frishman, D. ; Kramer, S.*
Pitfalls of supervised feature selection.
Bioinformatics 26, 440-443 (2010)